gatk-3.8/scala/qscript
kshakir 4b7c3af763 When /etc/mailname is unreadable fall back to the hostname.
Implicit conversions for String to/from File.
Small updates to the example QScripts.


git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@5614 348d0f76-0448-11de-a6fe-93d51630548a
2011-04-11 20:22:44 +00:00
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core bug fix in MDCP 2011-04-11 18:27:47 +00:00
examples When /etc/mailname is unreadable fall back to the hostname. 2011-04-11 20:22:44 +00:00
lib Thanks to mark: VCFInfoToTable removed in favor of a more flexible walker. Slight change to the argument structure of the walker to make it play more nicely with Queue: the field list parsing is pushed into the command line system (e.g. the variable is exposed as a List<String> and not a String, so Queue doesn't have to join a list into a string only to have it broken out again. This also allows the user to specify -F field1 -F field2 -F field3 if he/she so desires. 2010-12-15 03:33:36 +00:00
oneoffs Minor bug fixes 2011-04-08 17:30:40 +00:00
playground Walkers can now specify a class extending from Gatherer to merge custom output formats. Add @Gather(MyGatherer.class) to the walker @Output. 2011-03-24 14:03:51 +00:00