gatk3的最后一个经典版本3.8

Mark DePristo 4b206a3540 Check that -compress arguments are within range 0-9 ... -- Although the original bug report was about SplitSamFile it actually was an engine wide error. The two places in the that provide compression to the BAM write now check the validity of the compress argument via a static method in ReadUtils -- delivers #49531009		2013-05-31 15:29:02 -04:00
licensing	Removing the symlink from the private license file	2013-02-09 12:57:44 -05:00
protected	New implementation of the GGA mode in the HaplotypeCaller	2013-05-31 10:35:36 -04:00
public	Check that -compress arguments are within range 0-9	2013-05-31 15:29:02 -04:00
settings	Rev picard, sam-jdk, tribble, and variant to version 1.91.1453	2013-05-07 14:21:15 -04:00
.gitignore	Detect stuck lock-acquisition calls, and disable file locking for tests	2013-04-24 22:49:02 -04:00
build.xml	Restore scala compilation by default in build.xml	2013-05-31 11:28:29 -04:00
intellij_example.tar.bz2	Removed the intellij files from the root and made an example package for new users. This allows users to start at the same page and then change it as they see fit without interfering with the repo (thanks guillermo!)	2012-09-27 11:04:56 -04:00
ivy.xml	Brought all of ReduceReads to fastutils	2013-02-23 22:53:23 -05:00