gatk3的最后一个经典版本3.8

Mauricio Carneiro 4ac50c89ad Updating TestNG to the latest version ... -- changed SkipException constructors that are now private in TestNG -- Updated build.xml to use the latest testng -- Added guice dependency to ivy -- Fixed broken SampleDBUnitTest The SampleDBUnitTest was only passing before because the map comparison in the old TestNG was broken. It was comparing two DIFFERENT samples and testing for "equals" GSA-695 #resolve		2013-02-22 09:40:23 -05:00
licensing	Removing the symlink from the private license file	2013-02-09 12:57:44 -05:00
protected/java	Bug fix in LikelihoodCalculationEngine: Mapping quality was being cast to a byte and overflowing for reads with large mapping quality scores.	2013-02-21 14:34:17 -05:00
public	Updating TestNG to the latest version	2013-02-22 09:40:23 -05:00
settings	Haplotype/Allele based optimizations for the HaplotypeCaller that knock off nearly 20% of the total runtime (multi-sample).	2013-02-21 10:14:11 -05:00
.gitignore	Fixing the licensing scripts	2013-01-26 13:42:49 -05:00
build.xml	Updating TestNG to the latest version	2013-02-22 09:40:23 -05:00
intellij_example.tar.bz2	Removed the intellij files from the root and made an example package for new users. This allows users to start at the same page and then change it as they see fit without interfering with the repo (thanks guillermo!)	2012-09-27 11:04:56 -04:00
ivy.xml	Updating TestNG to the latest version	2013-02-22 09:40:23 -05:00