gatk3的最后一个经典版本3.8

Mauricio Carneiro 4a8466783a License Parser and update all license scripts ... * Implemented a script that parses and replaces the license (to be used by git on every commit) * Implemented a shell script that makes use of the license parser to add the license to all java files in the repo GSA-685 GSATDG-6 GSATDG-16		2013-01-09 15:56:50 -05:00
licensing	License Parser and update all license scripts	2013-01-09 15:56:50 -05:00
protected/java	Adding new command line argument requested on the forum to control the maximum number of haplotypes that are sent forward for genotyping. In the presence of a large degree of heterozygosity the current algorithm breaks down and so this argument would need to be increased.	2013-01-09 15:54:02 -05:00
public	Bug fix for the case of overlapping assembled and partially-assembled events created by the HC. Unfortunately the symbolic allele can't be combined with the indel allele because the reference basis will change.	2013-01-09 15:30:46 -05:00
settings	Final r119 tribble jar	2012-11-02 14:30:33 -04:00
.gitignore	adding some directories to gitignore	2012-09-27 11:09:41 -04:00
build.xml	Re-enabling contracts in tests in build.xml	2013-01-02 11:29:25 -05:00
intellij_example.tar.bz2	Removed the intellij files from the root and made an example package for new users. This allows users to start at the same page and then change it as they see fit without interfering with the repo (thanks guillermo!)	2012-09-27 11:04:56 -04:00
ivy.xml	Use build jars in test classpaths by default	2012-11-28 22:57:04 -05:00