ebanks dabdeb729e Eric broke the build. Eric broke the build. ... git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@4847 348d0f76-0448-11de-a6fe-93d51630548a		2010-12-15 17:01:38 +00:00
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analyzeconcordance	Final step in error refactoring. GATK exception is now ReviewedStingException, indicating that this exception is really what one wants. Only use this exception when you have thought about StingException vs. UserException and made a real decision.	2010-09-12 15:07:38 +00:00
examples	Final step in error refactoring. GATK exception is now ReviewedStingException, indicating that this exception is really what one wants. Only use this exception when you have thought about StingException vs. UserException and made a real decision.	2010-09-12 15:07:38 +00:00
gatk/walkers	Eric broke the build. Eric broke the build.	2010-12-15 17:01:38 +00:00
sample	Quick patch to fix the sample code. It wasn't actually initializing the sample data source, so I added a call to initializeSampleDataSource() in GenomeAnalysisEngine. I think there was just an error resolving the versions of GenomeAnalysisEngine	2010-09-17 14:05:26 +00:00
tools	Convert GenomeLocParser into an instance variable. This change is required	2010-11-10 17:59:50 +00:00
utils	Convert GenomeLocParser into an instance variable. This change is required	2010-11-10 17:59:50 +00:00