gatk-3.8/public/java
Christopher Hartl 4a08e8ca6e Minor tweaks to T2D-related qscripts. Replacing old md5s from the BeagleIntegrationTest. All differences boiled down either to the accounting of genotypes changed (./. --> 0/0 is no longer a "changed" genotype, and original genotypes that were ./. are represented as OG=. rather than OG=./. .)
This is somewhat of an arbitrary decision, and is negotiable. I could see treating

GT:PL   ./.:.

differently from

GT:PL   .:0,3,6

but am not sure the worth of doing so.
2012-01-23 08:25:34 -05:00
..
config Reorganized the codebase beneath top-level public and private directories, 2011-06-28 06:55:19 -04:00
src HaplotypeCaller is now an ActiveRegionWalker. 2012-01-22 14:31:01 -05:00
test Minor tweaks to T2D-related qscripts. Replacing old md5s from the BeagleIntegrationTest. All differences boiled down either to the accounting of genotypes changed (./. --> 0/0 is no longer a "changed" genotype, and original genotypes that were ./. are represented as OG=. rather than OG=./. .) 2012-01-23 08:25:34 -05:00