Christopher Hartl 4a08e8ca6e Minor tweaks to T2D-related qscripts. Replacing old md5s from the BeagleIntegrationTest. All differences boiled down either to the accounting of genotypes changed (./. --> 0/0 is no longer a "changed" genotype, and original genotypes that were ./. are represented as OG=. rather than OG=./. .) ... This is somewhat of an arbitrary decision, and is negotiable. I could see treating GT:PL ./.:. differently from GT:PL .:0,3,6 but am not sure the worth of doing so.		2012-01-23 08:25:34 -05:00
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config	Reorganized the codebase beneath top-level public and private directories,	2011-06-28 06:55:19 -04:00
src	HaplotypeCaller is now an ActiveRegionWalker.	2012-01-22 14:31:01 -05:00
test	Minor tweaks to T2D-related qscripts. Replacing old md5s from the BeagleIntegrationTest. All differences boiled down either to the accounting of genotypes changed (./. --> 0/0 is no longer a "changed" genotype, and original genotypes that were ./. are represented as OG=. rather than OG=./. .)	2012-01-23 08:25:34 -05:00