gatk-3.8

gatk3的最后一个经典版本3.8

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Mauricio Carneiro 49b616b8e6 Outputting compressed read names In an attempt to minimize file size, read names are compressed to a number. Reads with the same name will have the same number. Consensus reads will have a C in front of the number. Tests show an average 10% reduction (extra) in file size.		2011-10-27 16:59:58 -04:00
public	Oops, working too quickly last time. This is the proper fix for the potential NPE in the equals() test.	2011-10-27 15:32:08 -04:00
settings	Picard upgrade to 1.55.	2011-10-24 17:02:27 -04:00
.gitignore	Minor additions to the shared .gitignore file, now that Mark has checked one in.	2011-10-26 12:24:28 -04:00
LICENSE	One last test...	2011-06-28 19:18:17 -04:00
build.xml	No more hunting down R "resources". As a tradeoff Rscript cannot be specified on the commandline and will be found in the environment path.	2011-10-27 14:17:07 -04:00
ivy.xml	Fixed Ant / PluginManager issue where reflections was picking up all class files under current working directory due to "." in jar manifest classpaths.	2011-09-27 14:33:57 -04:00