kcibul 0b81a76420 added support for Picard IntervalList files to --interval_file ... git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@334 348d0f76-0448-11de-a6fe-93d51630548a		2009-04-08 16:49:43 +00:00
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TraversalEngine.java	added support for Picard IntervalList files to --interval_file	2009-04-08 16:49:43 +00:00
TraverseByLoci.java	Added RefMetaDataTracker system as a replacement for the List<RefenenceOrderedData> going into walkers. This system allows you to more easily get a tracker for processing using the lookup(name, default) system. See Pileup for an example.	2009-04-03 19:54:54 +00:00
TraverseByLociByReference.java	Added RefMetaDataTracker system as a replacement for the List<RefenenceOrderedData> going into walkers. This system allows you to more easily get a tracker for processing using the lookup(name, default) system. See Pileup for an example.	2009-04-03 19:54:54 +00:00
TraverseByReads.java	1. modifed by read traversals with indexes to be more general	2009-04-03 18:24:08 +00:00
TraverseByReference.java	Added RefMetaDataTracker system as a replacement for the List<RefenenceOrderedData> going into walkers. This system allows you to more easily get a tracker for processing using the lookup(name, default) system. See Pileup for an example.	2009-04-03 19:54:54 +00:00