gatk-3.8/java
ebanks 49af5269e5 Jared: feel free to change or revert, but until we move over to UG version...
Only print out positions with at least one non-ref call


git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@1830 348d0f76-0448-11de-a6fe-93d51630548a
2009-10-14 17:08:57 +00:00
..
config Provide a default logger, some config settings, and some doc updates. 2009-04-29 02:06:05 +00:00
src/org/broadinstitute/sting Jared: feel free to change or revert, but until we move over to UG version... 2009-10-14 17:08:57 +00:00
test/org/broadinstitute/sting Explicitly set output to GELI now that default is VCF 2009-10-13 22:12:03 +00:00