rpoplin 4969cb1957 CountCovariates uses new optimized ReadBackedPileup. It also smarter about re-doing calculations for the dnsnp variation rate sanity check. ... git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@2188 348d0f76-0448-11de-a6fe-93d51630548a		2009-11-30 20:35:40 +00:00
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config	Provide a default logger, some config settings, and some doc updates.	2009-04-29 02:06:05 +00:00
src/org/broadinstitute/sting	CountCovariates uses new optimized ReadBackedPileup. It also smarter about re-doing calculations for the dnsnp variation rate sanity check.	2009-11-30 20:35:40 +00:00
test/org/broadinstitute/sting	Changed the format of the recalibration csv file slightly so that it is easier to load the file into something like R and look at the values of the covariates.	2009-11-30 17:55:23 +00:00