Mark DePristo 24864fd5b0 GATK now writes BCF output to any file with .bcf extension ... -- Moved VCF and BCF writers to variantcontext.writers -- Updated vcf.jar build path -- Refactored VCFWriter and other code. Now the best (and soon to be only) way to create these files is through a factory method called VariantContextWriterFactory. Renamed the general VCFWriter interface to VariantContextWriter which is implemented by VCFWriter and BCF2Writer.		2012-05-24 10:57:00 -04:00
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bcf2	No dictionary in header. Now built dynamically from the header in the writer and codec	2012-05-24 10:56:58 -04:00
hapmap	Rev Tribble to r97, adding binary feature support	2012-05-03 07:31:48 -04:00
vcf	GATK now writes BCF output to any file with .bcf extension	2012-05-24 10:57:00 -04:00