rpoplin 933823c8bc Removed the StingException when mkdir fails for Sendu in AnalyzeCovariates. Incremental updates to VariantOptimizer. ... git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@3013 348d0f76-0448-11de-a6fe-93d51630548a		2010-03-16 19:45:02 +00:00
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analyzeConcordance	Using bitmap() instead of png() since the former doesn't rely on X11.	2010-02-23 05:31:51 +00:00
PlotDepthOfCoverage.R	Eliminate the shell items, as FH will be calling this with /broad/tools/apps/R-2.72/bin/Rscript	2010-03-09 20:15:21 +00:00
generateBySamplePlot.R	R script for graphing depth of coverage by sample name, and generating a loess curve for each sample's data.	2009-12-10 21:58:01 +00:00
plot_Annotations_BinnedTruthMetrics.R	Making the dotted quartile lines more clear.	2010-02-03 22:23:09 +00:00
plot_OptimizationCurve.R	Removed the StingException when mkdir fails for Sendu in AnalyzeCovariates. Incremental updates to VariantOptimizer.	2010-03-16 19:45:02 +00:00
plot_residualError_OtherCovariate.R	Update to AnalyzeCovariates to make the histogram of PairedReadOrder look a little nicer	2010-01-13 20:26:31 +00:00
plot_residualError_QualityScoreCovariate.R	Added an option to AnalyzeCovariates to set the max value of the histograms to make them easier to directly compare.	2010-01-31 23:13:57 +00:00
plotting_library.R	Eliminate the rescale factor -- heatmap automatically normalizes the data	2010-02-16 16:34:33 +00:00
whole_exome_bait_selection.R	R script for selecting a variety of baits (using %GC content and normalized coverage) for Nanostring assessment from those used in the Agilent whole exome hybrid selection design.	2009-09-22 18:10:14 +00:00