gatk3的最后一个经典版本3.8

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Ryan Poplin 4957359963 Merge pull request #620 from broadinstitute/ldg_fixCGL Fixed GP annotation reading bug and updated integration test		2014-05-02 11:38:06 -04:00
licensing	deleted old license files	2013-07-02 16:36:47 -04:00
protected	When we subset PLs because Alleles are removed during genotyping we also need to subset AD.	2014-04-28 15:52:26 -04:00
public	Java 8 compatability fix: `Reflections` NPE bugfix.	2014-04-29 13:34:03 -04:00
settings/helpTemplates	Replaced local drmaa and Jama artifacts with versions from maven central.	2014-02-22 01:21:35 +08:00
.gitignore	Fixed bug using GraphBased due to infinite likelihoods resulting from the calculation of alignment cost of very long insertion or deletions (done in linear scale)	2014-04-01 16:14:52 -04:00
README.md	Update README file for the 2.6 release	2013-06-20 13:08:29 -04:00
ant-bridge.sh	Rename existing PipelineTests to QueueTests to prepare for upcoming push of new pipeline tests	2014-03-10 21:24:03 -04:00
intellij_example.tar.bz2	Removed the intellij files from the root and made an example package for new users. This allows users to start at the same page and then change it as they see fit without interfering with the repo (thanks guillermo!)	2012-09-27 11:04:56 -04:00
pom.xml	Quoting -out parameter during resource bundle (StingText.properties) creation.	2014-04-15 17:06:49 +08:00

The Genome Analysis Toolkit