gatk3的最后一个经典版本3.8

Mark DePristo 48f271c5bd Adding 80% support for multi-allelic variants ... -- Multi-allelic variants are split into their bi-allelic version, trimmed, and we attempt to provide a meaningful genotype for NA12878 here. It's not perfect and needs some discussion on how to handle het/alt variants -- Adding splitInBiallelic funtion to VariantContextUtils as well as extensive unit tests that also indirectly test reverseTrimAlleles (which worked perfectly FYI)		2012-11-21 17:24:59 -05:00
licensing	Final final final version of the license.	2012-07-20 18:00:02 -04:00
protected/java	Lots more GGA fixes for the HC now that I understand what's going on internally. Integration tests pass except for the GGA test which I believe now produces better results.	2012-11-20 16:13:29 -05:00
public	Adding 80% support for multi-allelic variants	2012-11-21 17:24:59 -05:00
settings	Final r119 tribble jar	2012-11-02 14:30:33 -04:00
.gitignore	adding some directories to gitignore	2012-09-27 11:09:41 -04:00
build.xml	Merging CMI-0.5.0 and GATK-2.2 together.	2012-11-14 10:42:03 -05:00
intellij_example.tar.bz2	Removed the intellij files from the root and made an example package for new users. This allows users to start at the same page and then change it as they see fit without interfering with the repo (thanks guillermo!)	2012-09-27 11:04:56 -04:00
ivy.xml	Updated google reflections due to stale slf4j version conflicting with other projects also trying to use Queue as a component.	2012-10-16 02:22:30 -04:00