David Roazen d82b855c4c Rev picard, sam-jdk, and tribble ... This is a necessary prerequisite for the org.broadinstitute.variant migration. -Picard and sam-jdk go from version 1.67.1197 to 1.84.1337 -Picard-private goes from version 2375 to 2662 -Tribble goes from version 119 to 1.84.1337 -RADICALLY trimmed down the list of classes we extract from Picard-private (jar goes from 326993 bytes to 6445 bytes!)		2013-01-31 16:32:45 -05:00
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Aligner.xml	Reorganized the codebase beneath top-level public and private directories,	2011-06-28 06:55:19 -04:00
CreatePackager.xsl	Build system round 2: finished preparing the packaging system for dual protected/lite releases	2012-05-29 13:54:51 -04:00
GATKEngine.xml	Remove DepthOfCoverage.java because it is no longer public	2013-01-10 11:45:38 -05:00
GenomeAnalysisTK.xml	Removed 'Walker' suffix from packages/GATKEngine.xml that were breaking the packaged release.	2012-07-23 16:32:31 -04:00
PicardPrivate.xml	Rev picard, sam-jdk, and tribble	2013-01-31 16:32:45 -05:00
Queue.xml	Removed 'Walker' suffix from packages/GATKEngine.xml that were breaking the packaged release.	2012-07-23 16:32:31 -04:00
QueueEngine.xml	Build system round 2: finished preparing the packaging system for dual protected/lite releases	2012-05-29 13:54:51 -04:00