hanna 4837fe919c Convenience changes. If no -BWT option is specified, pull the BWT location from the reference. ... git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@2130 348d0f76-0448-11de-a6fe-93d51630548a		2009-11-23 22:46:05 +00:00
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config	Provide a default logger, some config settings, and some doc updates.	2009-04-29 02:06:05 +00:00
src/org/broadinstitute/sting	Convenience changes. If no -BWT option is specified, pull the BWT location from the reference.	2009-11-23 22:46:05 +00:00
test/org/broadinstitute/sting	Update to the UG integration test. Why I had to rm -rf my entire sting directory to get it to correctly fail we may never know.	2009-11-23 21:23:00 +00:00