gatk3的最后一个经典版本3.8

Eric Banks 481982202d Fixing the failing RR integration tests. ... * After consulting Tim/David/Mauricio we determined that the md5 changes were due to different encodings of binary arrays in samjdk * However, it made no functional difference to the results (confirmed by Eric) so we agreed to update md5s * Also, the header of one of the test bams was malformed but old picard jar didn't perform checks so it only started failing now * Fixed the bam		2013-02-06 12:40:56 -05:00
licensing	Refrain from pushing symlinks into the repo... not all filesystems treat it correctly	2013-01-22 15:18:19 -07:00
protected/java	Fixing the failing RR integration tests.	2013-02-06 12:40:56 -05:00
public	Merge pull request #13 from broadinstitute/dr_variant_migration_GSA-692	2013-02-06 07:22:30 -08:00
settings	Replace org.broadinstitute.variant with jar built from the Picard repo	2013-02-05 17:24:25 -05:00
.gitignore	Fixing the licensing scripts	2013-01-26 13:42:49 -05:00
build.xml	Minor build.xml cleanup post-variant-migration	2013-02-06 11:16:52 -05:00
intellij_example.tar.bz2	Removed the intellij files from the root and made an example package for new users. This allows users to start at the same page and then change it as they see fit without interfering with the repo (thanks guillermo!)	2012-09-27 11:04:56 -04:00
ivy.xml	Replace org.broadinstitute.variant with jar built from the Picard repo	2013-02-05 17:24:25 -05:00