Mark DePristo 4811a00891 GENOTYPE_FILTER_KEY is now a VCFStandardHeaderLine		2012-06-28 10:06:05 -04:00
..
config	Reorganized the codebase beneath top-level public and private directories,	2011-06-28 06:55:19 -04:00
src	GENOTYPE_FILTER_KEY is now a VCFStandardHeaderLine	2012-06-28 10:06:05 -04:00
test	NestedHashMap-based implementation of BQSRv2 along with a few minor optimizations. Not a huge runtime upgrade over the long bitset approach, but it allows us to implement further optimizations going forward. Integration test change because the original version had a bug in the quantized qual table creation.	2012-06-27 16:55:49 -04:00