droazen 48055d45cb Added support for PICARD functions to QUEUE after following Khalid's pointers on where to do it. I have added the 6 functions used by the Data Processing Pipeline, but from now on it should be a matter of seconds to copy/paste and create bindings to more functions. ... Updated the Data Processing Pipeline to use the new Picard classes and reorganized the pre-processing of the pipeline accordingly. Will only update the wiki once this change goes live. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@6071 348d0f76-0448-11de-a6fe-93d51630548a		2011-06-22 22:56:14 +00:00
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qscript	Added support for PICARD functions to QUEUE after following Khalid's pointers on where to do it. I have added the 6 functions used by the Data Processing Pipeline, but from now on it should be a matter of seconds to copy/paste and create bindings to more functions.	2011-06-22 22:56:14 +00:00
src/org/broadinstitute/sting	Added support for PICARD functions to QUEUE after following Khalid's pointers on where to do it. I have added the 6 functions used by the Data Processing Pipeline, but from now on it should be a matter of seconds to copy/paste and create bindings to more functions.	2011-06-22 22:56:14 +00:00
test/org/broadinstitute/sting/queue	Minor update so the debug messages don't show temp files as chromosome 208799060637697164972	2011-05-26 22:56:33 +00:00