chartl 47fa7e2227 + Added override to extractFileEntries ... + UG now doesn't care whether it's given SNPs or indels to genotype, it will do the right thing -- so remove the option to specify which GM user wants + Max misamatches argument removed integration test will follow git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@5638 348d0f76-0448-11de-a6fe-93d51630548a		2011-04-14 15:13:35 +00:00
..
qscript	+ Added override to extractFileEntries	2011-04-14 15:13:35 +00:00
src/org/broadinstitute/sting	Emailing on function start.	2011-04-14 14:55:35 +00:00
test/org/broadinstitute/sting/queue	Put a band-aid on the FCP by switching use of DINDEL to INDEL and explicitly running UG the old way with just indels and just snps.	2011-04-14 02:22:31 +00:00