Roger Zurawicki 47607a7eff Fixed bug where deletions messed up interval clipping ... - Instead of using readLength, the ReadUtil function are used to get a proper read coordinate - Added debug info in interval clipping ( with -dl) NOTE: method might not be safe for production and checks need to be added to the ClippingOp code		2011-09-06 14:25:57 -04:00
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config	Reorganized the codebase beneath top-level public and private directories,	2011-06-28 06:55:19 -04:00
src	Fixed bug where deletions messed up interval clipping	2011-09-06 14:25:57 -04:00
test	Bugfix for file that must not exist on disk	2011-08-29 17:00:10 -04:00