gatk3的最后一个经典版本3.8

Roger Zurawicki 47607a7eff Fixed bug where deletions messed up interval clipping ... - Instead of using readLength, the ReadUtil function are used to get a proper read coordinate - Added debug info in interval clipping ( with -dl) NOTE: method might not be safe for production and checks need to be added to the ClippingOp code		2011-09-06 14:25:57 -04:00
public	Fixed bug where deletions messed up interval clipping	2011-09-06 14:25:57 -04:00
settings	Merged bug fix from Stable into Unstable	2011-08-29 19:36:43 -04:00
LICENSE	One last test...	2011-06-28 19:18:17 -04:00
build.xml	Enable conditional inclusion of documentation for hidden features in GATKDocs.	2011-08-27 03:38:01 -04:00
ivy.xml	The tribble dependency is now handled through ivy. Revved tribble to r18 and removed obsolete build targets in build.xml	2011-08-11 16:38:29 -04:00