gatk-3.8/doc/Ant_Help.tex

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\begin{description}
\item[compile] Compiles all java code in the source tree. Places generated classes in the build directory.
\item[dist] Generates jar files, suitable for running via java -jar {YOUR\_JAR}. Places resulting jars in the dist subdirectory.
\item[resolve] Resolves third-party dependencies. Downloads all third-party dependencies to the lib directory.
\item[javadoc] Generates javadoc for the source tree. Places javadoc in the javadoc directory.
\item[clean] Removes artifacts from old compilations / distributions.
\end{description}
View all available ant targets by running 'ant -projecthelp' in the directory containing build.xml.