Eric Banks 6a73265a06 RR bug: we were adding synthetic reads from the header only before the variant region, which meant that reads that overlap the variant region but that weren't used for the consensus (because e.g. of low base quality for the spanning base) were never being used at all. Instead, add synthetic reads from before and spanning the variant region.		2012-09-24 13:29:37 -04:00
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src/org/broadinstitute/sting	RR bug: we were adding synthetic reads from the header only before the variant region, which meant that reads that overlap the variant region but that weren't used for the consensus (because e.g. of low base quality for the spanning base) were never being used at all. Instead, add synthetic reads from before and spanning the variant region.	2012-09-24 13:29:37 -04:00
test/org/broadinstitute/sting/gatk/walkers	Turn off RR tests while I debug	2012-09-21 17:26:00 -04:00