gatk3的最后一个经典版本3.8

Mark DePristo 4749fc114f Temp. disable -nt > 1 and -nct > 1 while bugs are worked out		2012-09-24 14:15:35 -04:00
licensing	Revert unintentional license change	2012-08-09 17:10:47 -04:00
protected/java	RR bug: we were adding synthetic reads from the header only before the variant region, which meant that reads that overlap the variant region but that weren't used for the consensus (because e.g. of low base quality for the spanning base) were never being used at all. Instead, add synthetic reads from before and spanning the variant region.	2012-09-24 13:29:37 -04:00
public	Temp. disable -nt > 1 and -nct > 1 while bugs are worked out	2012-09-24 14:15:35 -04:00
settings	Updating cofoja to the latest version	2012-08-09 16:36:18 -04:00
.gitignore	a few more useful git ignores	2012-09-01 11:08:36 -04:00
build.xml	Proper error handling in NanoScheduler	2012-09-19 17:03:13 -04:00
ivy.xml	Updating cofoja to the latest version	2012-08-09 16:36:18 -04:00