ebanks e50627a49e 1. Updated tests and added integration test for liftover code. ... 2. Updated liftover code (and scripts) to emit vcf 4.0 and no longer depend on VCFRecord. 3. Beagle walker now also emits vcf 4.0. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@3767 348d0f76-0448-11de-a6fe-93d51630548a		2010-07-12 17:58:18 +00:00
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net/sf/picard/reference	IndexedFastaSequenceFile is now in Picard; transitioning to that implementation.	2010-07-01 04:40:31 +00:00
org/broadinstitute/sting	1. Updated tests and added integration test for liftover code.	2010-07-12 17:58:18 +00:00