hanna 46c14ec63f New, much less memory intensive implementation of BAM file sharding. Streams indices together with the expectation ... that bins will be present in the bin sparse array, which avoids the problem of having to hold the sparse bin array stored in every BAM file index in memory at the same time. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@3075 348d0f76-0448-11de-a6fe-93d51630548a		2010-03-25 17:41:22 +00:00
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config	Provide a default logger, some config settings, and some doc updates.	2009-04-29 02:06:05 +00:00
src/org/broadinstitute/sting	New, much less memory intensive implementation of BAM file sharding. Streams indices together with the expectation	2010-03-25 17:41:22 +00:00
test/org/broadinstitute/sting	Updated. Now uses VariantContext and is truly "variants" to vcf (i.e. not just GELI to vcf).	2010-03-25 04:53:31 +00:00