Mauricio Carneiro f0c81b59b0 Implementation of the new BQSR plotting infrastructure ... * removed low quality bases from the recalibration report. * refactored the Datum (Recal and Accuracy) class structure * created a new plotting csv table for optimized performance with the R script * added a datum object that carries the accuracy information (AccuracyDatum) for plotting * added mean reported quality score to all covariates * added QualityScore as a covariate for plotting purposes * added unit test to the key manager to operate with one required covariate and multiple optional covariates * integrated the plotting into BQSR (automatically generates the pdf with the recalibration tearsheet)		2012-04-17 19:23:55 -04:00
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net/sf	Fix serious engine bug that could cause reads to be dropped under certain circumstances	2012-02-13 16:25:21 -05:00
org/broadinstitute/sting	Implementation of the new BQSR plotting infrastructure	2012-04-17 19:23:55 -04:00