Christopher Hartl d795437202 - New UserExceptions added for when ReadFilters or Walkers specified on the command line are not found. When -rf xxxx cannot find the class corresponding to xxxx, all read filters are printed in a better formatted way, with links to their gatk docs. ... - VariantAnnotatorEngine changed to call genotype annotations even if pilups and allele -> likelihood mappings are not present. Current genotype annotations altered to check for null pilupes and null mappings.		2012-09-04 16:41:44 -04:00
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ArgumentMatchSiteUnitTest.java	Added ability to specify arguments in files via -args/--arg_file	2011-10-24 15:58:34 -04:00
ArgumentMatchSourceUnitTest.java	Added ability to specify arguments in files via -args/--arg_file	2011-10-24 15:58:34 -04:00
InvalidArgumentIntegrationTest.java	- New UserExceptions added for when ReadFilters or Walkers specified on the command line are not found. When -rf xxxx cannot find the class corresponding to xxxx, all read filters are printed in a better formatted way, with links to their gatk docs.	2012-09-04 16:41:44 -04:00
ParsingEngineUnitTest.java	Cleanup of VCF header lines and constants, BCF2 bugfixes	2012-06-21 15:16:31 -04:00
RodBindingUnitTest.java	Adding missing import	2011-08-04 21:57:00 -04:00