gatk3的最后一个经典版本3.8

Mauricio Carneiro 4642e4eb66 Merge branch 'unstable' of https://github.com/broadinstitute/cmi-gatk into unstable		2012-10-15 13:50:03 -04:00
licensing	Revert unintentional license change	2012-08-09 17:10:47 -04:00
protected/java	Making nContigs parameter hidden in ReduceReads	2012-10-15 13:49:08 -04:00
public	Allowing the GATK to have non-required outputs	2012-10-15 13:49:08 -04:00
settings	Updating cofoja to the latest version	2012-08-09 16:36:18 -04:00
.gitignore	adding some directories to gitignore	2012-10-10 13:26:13 -04:00
build.xml	Proper error handling in NanoScheduler	2012-09-19 17:03:13 -04:00
intellij_example.tar.bz2	Adding intellij example files to the repo	2012-10-15 13:49:09 -04:00
ivy.xml	Updating cofoja to the latest version	2012-08-09 16:36:18 -04:00