Valentin Ruano-Rubio 463af7143f Activate reverse allele trimming in GVCF ... Story: https://www.pivotaltracker.com/s/projects/1007536 Changes: 1. HC's GenotypingEngine now invokes reverseAlleleTrimming on GVCF variant output lines. 2. GenotypeGVCFs also reverse trim after regenotyping as some alt. alleles are dropped (observed in real-data).		2014-02-20 03:17:24 -05:00
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gatk	Activate reverse allele trimming in GVCF	2014-02-20 03:17:24 -05:00
utils	Fixing a bug in the GVCF writer.	2014-02-20 02:33:43 -05:00
package-info.java	Moved files to maven directories.	2014-02-03 13:50:44 -05:00