Valentin Ruano-Rubio 463af7143f Activate reverse allele trimming in GVCF ... Story: https://www.pivotaltracker.com/s/projects/1007536 Changes: 1. HC's GenotypingEngine now invokes reverseAlleleTrimming on GVCF variant output lines. 2. GenotypeGVCFs also reverse trim after regenotyping as some alt. alleles are dropped (observed in real-data).		2014-02-20 03:17:24 -05:00
..
gatk-protected	Activate reverse allele trimming in GVCF	2014-02-20 03:17:24 -05:00
scala/test/org/broadinstitute/sting/queue/pipeline/examples	Fix improper dependencies in QScripts used by pipeline tests, and attempt to fix the flawed MisencodedBaseQualityUnitTest	2013-02-27 04:45:53 -05:00
pom.xml	Bumped version to 2.8-SNAPSHOT, using new update_pom_versions.sh script.	2014-02-03 13:50:46 -05:00