gatk3的最后一个经典版本3.8

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Valentin Ruano-Rubio 463af7143f Activate reverse allele trimming in GVCF Story: https://www.pivotaltracker.com/s/projects/1007536 Changes: 1. HC's GenotypingEngine now invokes reverseAlleleTrimming on GVCF variant output lines. 2. GenotypeGVCFs also reverse trim after regenotyping as some alt. alleles are dropped (observed in real-data).		2014-02-20 03:17:24 -05:00
licensing	deleted old license files	2013-07-02 16:36:47 -04:00
protected	Activate reverse allele trimming in GVCF	2014-02-20 03:17:24 -05:00
public	Merge pull request #528 from broadinstitute/eb_fix_cat_variants_usage_message	2014-02-19 22:45:22 -05:00
settings	Switched commited dependency repository from ivy to maven.	2014-02-03 13:50:46 -05:00
.gitignore	Adding the external example to the build.	2014-02-15 01:26:07 +08:00
README.md	Update README file for the 2.6 release	2013-06-20 13:08:29 -04:00
ant-bridge.sh	Add ability to run *KnowledgeBaseTests to maven	2014-02-11 14:08:24 -05:00
intellij_example.tar.bz2	Removed the intellij files from the root and made an example package for new users. This allows users to start at the same page and then change it as they see fit without interfering with the repo (thanks guillermo!)	2012-09-27 11:04:56 -04:00
pom.xml	Merge pull request #518 from broadinstitute/ks_skashin_gatkdocs_arguments	2014-02-14 13:57:19 -05:00

The Genome Analysis Toolkit