Eric Banks 9c088fe3fe Actually a better implementation of GATKSAMRecord.getSoftStart(). Last commit was all wrong. Oops.		2012-10-19 12:41:24 -04:00
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config	Reorganized the codebase beneath top-level public and private directories,	2011-06-28 06:55:19 -04:00
src	Actually a better implementation of GATKSAMRecord.getSoftStart(). Last commit was all wrong. Oops.	2012-10-19 12:41:24 -04:00
test	In order to be considered an informative read in the PerReadAlleleLikelihoodMap it has to be informative compared to all other alleles not just the worst allele. Also, fixing a bug when there is only one allele in the map.	2012-10-18 14:31:15 -04:00