Mark DePristo df90597bfc Performance optimizations and caliper benchmarking code for consolidateCigar ... -- Now that this function is used in the core of LIBS it needed some basic optimizations, which are now complete, pass all unit tests. -- Added caliper benchmark for AlignmentUtils to assess performance (showing new version is 3x-10x faster) -- Remove unused import in ReadStateManager		2013-04-24 11:36:43 -04:00
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config	Reorganized the codebase beneath top-level public and private directories,	2011-06-28 06:55:19 -04:00
src	Performance optimizations and caliper benchmarking code for consolidateCigar	2013-04-24 11:36:43 -04:00
test	Refactored binomial probability code in MathUtils.	2013-04-16 18:19:07 -04:00