hanna a7fe07c404 A few stopgap fixes to get the GATK to the point where the old sharding ... infrastructure can be torn down: 1) New sharding system emulates old MonolithicSharding mechanism. 2) Better awareness of differences between fasta and BAM files when creating shards. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@2948 348d0f76-0448-11de-a6fe-93d51630548a		2010-03-07 21:01:25 +00:00
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picard/sam	Fix for some correctness bugs found during early performance testing, phase 1.	2010-02-10 22:32:25 +00:00
samtools	A few stopgap fixes to get the GATK to the point where the old sharding	2010-03-07 21:01:25 +00:00