Khalid Shakir 45d819a00e For now, executing the delete_maven_links.sh just ahead of creating the symbolic links during the process-test-resources phase. ... Better than running it during the "clean" phase, since these users may not run "mvn clean" before attempting to build.		2014-06-25 02:32:15 +08:00
..
VectorPairHMM	Changed 'sting' to 'gatk' in the VectorLoglessPairHMM classes and the	2014-05-19 17:36:41 -04:00
c	After renaming the packages, instead of updating the JNI library used for testing bwa, moving the classes to the archive.	2014-05-19 17:36:41 -04:00
chainFiles	The contig is named MT not M in b36. Delivers PT68890442.	2014-04-08 10:03:47 -04:00
doc	Refactored maven directories and java packages replacing "sting" with "gatk".	2014-05-19 17:36:39 -04:00
external-example	Refactored maven directories and java packages replacing "sting" with "gatk".	2014-05-19 17:36:39 -04:00
gatk-engine	Refactored maven directories and java packages replacing "sting" with "gatk".	2014-05-19 17:36:39 -04:00
gatk-queue	Refactored maven directories and java packages replacing "sting" with "gatk".	2014-05-19 17:36:39 -04:00
gatk-queue-extensions-generator	Refactored maven directories and java packages replacing "sting" with "gatk".	2014-05-19 17:36:39 -04:00
gatk-queue-extensions-public	From Carlos Barroto: made 'level' in Picard's CalculateHsMetrics Scala Queue extension an argument.	2014-06-19 11:06:50 -04:00
gatk-root	Refactored maven directories and java packages replacing "sting" with "gatk".	2014-05-19 17:36:39 -04:00
gatk-tools-public	Recast the "Invalid JEXL expression detected" error in SelectVariants from a RuntimeException to a UserException	2014-06-20 00:05:23 -04:00
gatk-utils	Changed 'sting' to 'gatk' in the VectorLoglessPairHMM classes and the	2014-05-19 17:36:41 -04:00
gsalib	Refactored maven directories and java packages replacing "sting" with "gatk".	2014-05-19 17:36:39 -04:00
java/config	Refactored maven directories and java packages replacing "sting" with "gatk".	2014-05-19 17:36:39 -04:00
package-tests	Refactored maven directories and java packages replacing "sting" with "gatk".	2014-05-19 17:36:39 -04:00
perl	Fixing the liftover script to not require strict VCF header validation.	2013-11-07 09:02:17 -05:00
repo	Refactored maven directories and java packages replacing "sting" with "gatk".	2014-05-19 17:36:39 -04:00
src/main/scripts/shell	For now, executing the delete_maven_links.sh just ahead of creating the symbolic links during the process-test-resources phase.	2014-06-25 02:32:15 +08:00
pom.xml	Refactored maven directories and java packages replacing "sting" with "gatk".	2014-05-19 17:36:39 -04:00