gatk3的最后一个经典版本3.8

Mark DePristo 458bbdee8f Add useful logger.info telling us the mismatch and indel context sizes		2012-08-12 10:27:05 -04:00
licensing	Revert unintentional license change	2012-08-09 17:10:47 -04:00
protected/java	Adding support of X and = CIGAR operators to the GATK	2012-08-10 14:54:07 -04:00
public	Add useful logger.info telling us the mismatch and indel context sizes	2012-08-12 10:27:05 -04:00
settings	Updating cofoja to the latest version	2012-08-09 16:36:18 -04:00
.gitignore	Minor additions to the shared .gitignore file, now that Mark has checked one in.	2011-10-26 12:24:28 -04:00
build.xml	Update cofoja version in build.xml	2012-08-09 17:08:43 -04:00
ivy.xml	Updating cofoja to the latest version	2012-08-09 16:36:18 -04:00