gatk3的最后一个经典版本3.8

Eric Banks 4543ece088 Fixing parsing of genomelocs that contain colons in the contig names (which is allowed by the spec) as reported on the forum. Added unit test for this case.		2012-11-27 11:00:33 -05:00
licensing	Final final final version of the license.	2012-07-20 18:00:02 -04:00
protected/java	Soft clipped bases shouldn't be counted in the delocalized BQSR.	2012-11-25 21:55:29 -05:00
public	Fixing parsing of genomelocs that contain colons in the contig names (which is allowed by the spec) as reported on the forum. Added unit test for this case.	2012-11-27 11:00:33 -05:00
settings	Updated google reflections due to stale slf4j version conflicting with other projects also trying to use Queue as a component.	2012-10-16 02:22:30 -04:00
.gitignore	adding some directories to gitignore	2012-09-27 11:09:41 -04:00
build.xml	Refuse to package the GATK from a non-clean working directory	2012-11-02 19:11:24 -04:00
intellij_example.tar.bz2	Removed the intellij files from the root and made an example package for new users. This allows users to start at the same page and then change it as they see fit without interfering with the repo (thanks guillermo!)	2012-09-27 11:04:56 -04:00
ivy.xml	Updated google reflections due to stale slf4j version conflicting with other projects also trying to use Queue as a component.	2012-10-16 02:22:30 -04:00