gatk-3.8

History

Mark DePristo 73f9d1f217 GATK read group requirement iron hand -- The GATK will now throw a user exception if it opens a SAM/BAM file that doesn't have at least one RG defined -- LIBS again throws an error if the complete list of samples isn't provided -- Updating ExmpleCountLociPipeline test to use the well-formated versions of the exampleBAM and exampleFASTA files in testdata, instead of the old broken ones in validation_data. -- Convenience constructors for UserExceptions.MalformedBAM	2011-10-06 08:40:35 -07:00
..
net/sf	Removed annoying FastaSequenceIndexBuilderProgressListener infrastructure that was just a boolean switch on whether to print progress or not.	2011-07-27 22:06:23 -04:00
org/broadinstitute/sting	GATK read group requirement iron hand	2011-10-06 08:40:35 -07:00

Mark DePristo 73f9d1f217 GATK read group requirement iron hand

-- The GATK will now throw a user exception if it opens a SAM/BAM file that doesn't have at least one RG defined
-- LIBS again throws an error if the complete list of samples isn't provided
-- Updating ExmpleCountLociPipeline test to use the well-formated versions of the exampleBAM and exampleFASTA files in testdata, instead of the old broken ones in validation_data.
-- Convenience constructors for UserExceptions.MalformedBAM

2011-10-06 08:40:35 -07:00

net/sf

Removed annoying FastaSequenceIndexBuilderProgressListener infrastructure that was just a boolean switch on whether to print progress or not.

2011-07-27 22:06:23 -04:00

org/broadinstitute/sting

GATK read group requirement iron hand

2011-10-06 08:40:35 -07:00