gatk3的最后一个经典版本3.8

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Eric Banks 4512940e87 Initial implementation of functionality to add physical phasing information to the output of the HaplotypeCaller. If any pair of variants occurs on all used haplotypes together, then we propagate that information into the gVCF. Can be enabled with the --tryPhysicalPhasing argument.		2014-08-13 12:25:31 -04:00
licensing	deleted old license files	2013-07-02 16:36:47 -04:00
protected	Initial implementation of functionality to add physical phasing information to the output of the HaplotypeCaller.	2014-08-13 12:25:31 -04:00
public	Initial implementation of functionality to add physical phasing information to the output of the HaplotypeCaller.	2014-08-13 12:25:31 -04:00
settings/helpTemplates	Various documentation improvements	2014-07-14 12:03:03 -04:00
.gitignore	Fixed bug using GraphBased due to infinite likelihoods resulting from the calculation of alignment cost of very long insertion or deletions (done in linear scale)	2014-04-01 16:14:52 -04:00
README.md	Update README file for the 2.6 release	2013-06-20 13:08:29 -04:00
ant-bridge.sh	Refactored maven directories and java packages replacing "sting" with "gatk".	2014-05-19 17:36:39 -04:00
intellij_example.tar.bz2	Removed the intellij files from the root and made an example package for new users. This allows users to start at the same page and then change it as they see fit without interfering with the repo (thanks guillermo!)	2012-09-27 11:04:56 -04:00
pom.xml	Update pom versions to mark the start of GATK 3.3 development	2014-07-17 12:09:33 -04:00

README.md

The Genome Analysis Toolkit

See http://www.broadinstitute.org/gatk/