Mark DePristo e1bba91836 Ready for full-scale evaluation adaptive BQSR contexts ... -- VisualizeContextTree now can write out an equivalent BQSR table determined after adaptive context merging of all RG x QUAL x CONTEXT trees -- Docs, algorithm descriptions, etc so that it makes sense what's going on -- VisualizeContextTree should really be simplified when into a single tool that just visualize the trees when / if we decide to make adaptive contexts standard part of BQSR -- Misc. cleaning, organization of the code (recalibation tests were in private but corresponding actual files were public)		2012-08-03 16:02:53 -04:00
..
net/sf	Cleanup of VCF header lines and constants, BCF2 bugfixes	2012-06-21 15:16:31 -04:00
org/broadinstitute/sting	Ready for full-scale evaluation adaptive BQSR contexts	2012-08-03 16:02:53 -04:00