depristo 5d5dc989e7 improvements to VCF and variant eval support of VCF -- now listens to the filter field ... git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@1963 348d0f76-0448-11de-a6fe-93d51630548a		2009-11-03 12:09:30 +00:00
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examples	Update naming for consistency.	2009-06-30 22:03:21 +00:00
gatk/walkers	improvements to VCF and variant eval support of VCF -- now listens to the filter field	2009-11-03 12:09:30 +00:00
indels	change paths to new ones	2009-07-24 07:28:43 +00:00
piecemealannotator	Cleanup...deprecate FastaSequenceFile2 in favor of IndexedFastaSequenceFile or ReferenceSequenceFile from Picard, depending on the application.	2009-07-08 18:49:08 +00:00
tools	Matthew Bainbridge's duplicate removal utility for 454 data. This code should eventually be moved into a read walker. For now, it's being introduced into the repository as-is (well, with one minor change to make the handling of command-line arguments a little more straightforward).	2009-10-08 18:32:37 +00:00
utils	2nd stage of the genotyper output refactoring is complete.	2009-11-02 22:43:08 +00:00