aaron 78409dca0d turned off the progress output from tribble when making an index, and fixing a case where the index file isn't writable so we instead make the index in memory. ... git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@3312 348d0f76-0448-11de-a6fe-93d51630548a		2010-05-06 16:36:58 +00:00
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alignment	Forgot to uncomment the AlignerIntegrationTest before committing. And yes, matt, commenting it out is, in fact, easier than just setting my classpath.	2010-04-01 17:17:16 +00:00
commandline	The copyright tag that I copied/pasted from a LaTeX document into IntelliJ had	2010-04-20 15:26:32 +00:00
gatk	turned off the progress output from tribble when making an index, and fixing a case where the index file isn't writable so we instead make the index in memory.	2010-05-06 16:36:58 +00:00
playground	VCF moved over to tribble.	2010-05-05 17:28:48 +00:00
utils	speed-up for VCF, adding code to the VCF reader to automagically make an index if one doesn't already exist, and a change to the VCF writer unit test	2010-05-05 20:19:42 +00:00
BaseTest.java	Adding performance tests for the recalibrator (Whole Genome and Whole Exome tests).	2010-04-09 18:30:59 +00:00
WalkerTest.java	The copyright tag that I copied/pasted from a LaTeX document into IntelliJ had	2010-04-20 15:26:32 +00:00