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gatk-3.8/public/java/test/org/broadinstitute/sting
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David Roazen 1296dd41be Removing the legacy -L "interval1;interval2" syntax 
This syntax predates the ability to have multiple -L arguments, is
inconsistent with the syntax of all other GATK arguments, requires
quoting to avoid interpretation by the shell, and was causing
problems in Queue.

A UserException is now thrown if someone tries to use this syntax.
 		2011-11-21 13:18:53 -05:00
..
alignment Reinitialize random seed in the bwa bindings from the fixed seed stored in the 2011-07-22 13:41:53 -04:00
commandline Added ability to specify arguments in files via -args/--arg_file 2011-10-24 15:58:34 -04:00
gatk Removing the legacy -L "interval1;interval2" syntax 2011-11-21 13:18:53 -05:00
jna Fixed an integration test which crashed on the out of date LSF DRMAA library when run against the obsolete LSF dotkit instead of .combined_LSF_SGE 2011-09-23 21:03:22 -04:00
pipeline Cleanup of the utils.broad package. 2011-07-01 20:47:03 -04:00
utils Removing the legacy -L "interval1;interval2" syntax 2011-11-21 13:18:53 -05:00
BaseTest.java merge master 2011-10-25 16:08:39 -04:00
MD5DB.java Merged bug fix from Stable into Unstable 2011-10-13 18:02:06 -04:00
StingTextReporter.java Reorganized the codebase beneath top-level public and private directories, 2011-06-28 06:55:19 -04:00
WalkerTest.java All MD5 mismatches for test are shown 2011-10-04 15:53:52 -07:00