David Roazen 1296dd41be Removing the legacy -L "interval1;interval2" syntax ... This syntax predates the ability to have multiple -L arguments, is inconsistent with the syntax of all other GATK arguments, requires quoting to avoid interpretation by the shell, and was causing problems in Queue. A UserException is now thrown if someone tries to use this syntax.		2011-11-21 13:18:53 -05:00
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net/sf	Removed annoying FastaSequenceIndexBuilderProgressListener infrastructure that was just a boolean switch on whether to print progress or not.	2011-07-27 22:06:23 -04:00
org/broadinstitute/sting	Removing the legacy -L "interval1;interval2" syntax	2011-11-21 13:18:53 -05:00