David Roazen d647ea4fdc Long-delayed change to CachingIndexedFastaSequenceFile. Made the cache ... non-static to avoid problems when multiple references are used within the same thread (eg., during integration tests). This should kill the intermittent IndelRealignerIntegrationTest failures.		2011-07-01 16:04:30 -04:00
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net/sf	Reorganized the codebase beneath top-level public and private directories,	2011-06-28 06:55:19 -04:00
org/broadinstitute/sting	Long-delayed change to CachingIndexedFastaSequenceFile. Made the cache	2011-07-01 16:04:30 -04:00