Eric Banks 4448a3ea76 Final tweaks. Added an integration test to cover the case of SNPs and indels that start at the same position.		2012-04-17 23:54:10 -04:00
..
R	Improve variantCallQC.R	2012-04-13 17:00:37 -04:00
c	At chartl's request, add the bwa aln -N and bwa aln -m parameters to the bindings.	2012-01-17 14:47:53 -05:00
chainFiles	Reorganized the codebase beneath top-level public and private directories,	2011-06-28 06:55:19 -04:00
doc	Reorganized the codebase beneath top-level public and private directories,	2011-06-28 06:55:19 -04:00
java	Final tweaks. Added an integration test to cover the case of SNPs and indels that start at the same position.	2012-04-17 23:54:10 -04:00
keys	Public-key authorization scheme to restrict use of NO_ET	2012-03-06 00:09:43 -05:00
packages	Public-key authorization scheme to restrict use of NO_ET	2012-03-06 00:09:43 -05:00
perl	Update to the bindings for liftOverVCF.pl (to -V from -B)	2011-09-15 15:33:09 -04:00
scala	AggregateMetrics:	2012-04-17 11:45:32 -04:00
testdata	continuing the BQSR triage...	2012-04-05 14:34:15 -04:00