Mark DePristo fb86887bf2 Fast algorithm for determining which kmers are good in a read ... -- old algorithm was O(kmerSize * readLen) for each read. New algorithm is O(readLen) -- Added real unit tests for the addKmersFromReads to the graph. Using a builder is great because we can create a MockBuilder that captures all of the calls, and then verify that all of the added kmers are the ones we'd expect.		2013-04-11 09:54:22 -04:00
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gatk/walkers	Fast algorithm for determining which kmers are good in a read	2013-04-11 09:54:22 -04:00
utils	Bug fix in SWPairwiseAlignment.	2013-04-10 16:04:37 -04:00