fromer 798955b006 After discussing with Mark, revert to "Master merging" of phase information from VCFs. This has the advantage of creating minimal phased VCFs from RBP, from which phase info is merged into the original "master VCF". Also, updated Genotype.sameGenotype() to be simpler and NOT REVERSE the ignorePhase flag in comparing Allele lists/sets ... git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@5167 348d0f76-0448-11de-a6fe-93d51630548a		2011-02-01 19:50:15 +00:00
..
chartl	Refactoring the qscript directory; oneoffs, playground, and core	2011-01-19 15:23:40 +00:00
delangel	Script for calling indels in all phase 1 samples - VQSR part still needs work but raw calling is done	2011-01-22 14:07:10 +00:00
depristo	Take (partial) ownership of phasing 1000G chr20 calls	2011-01-31 21:49:41 +00:00
fromer	After discussing with Mark, revert to "Master merging" of phase information from VCFs. This has the advantage of creating minimal phased VCFs from RBP, from which phase info is merged into the original "master VCF". Also, updated Genotype.sameGenotype() to be simpler and NOT REVERSE the ignorePhase flag in comparing Allele lists/sets	2011-02-01 19:50:15 +00:00
hanna	Refactoring the qscript directory; oneoffs, playground, and core	2011-01-19 15:23:40 +00:00
kshakir	Refactoring the qscript directory; oneoffs, playground, and core	2011-01-19 15:23:40 +00:00
rpoplin	quick update with the correct CEU trio bam file and it's final location.	2011-01-27 19:17:19 +00:00